About VarScan
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects...
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes. THE LATEST VERSION IS AVAILABLE ON GITHUB
Features
- Calls SNPs and Indels from SAMtools pileup files
- Filters variants by coverage, read depth, variant frequency, and base quality
- Determines somatic status (Somatic, Germline, LOH) for Tumor-Normal pairs
- Compares, merges, and intersects two lists of variants
- Limits variant calls to a set of target positions or target regions
- Free for non-commercial use.
Previous Versions
Here you can find the changelog of VarScan since it was posted on our website on 2015-04-28 03:00:00.
The latest version is 3.9 and it was updated on 2024-03-29 15:41:51. See below the changes in each version.
VarScan version 3.9
Updated At: 2015-06-03
VarScan version files
Updated At: 2010-11-08
Changes: Several fixes and updates
Disclaimer
External Download
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