VarScan3.9 - Download
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Publisher Description
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes. THE LATEST VERSION IS AVAILABLE ON GITHUB
- Calls SNPs and Indels from SAMtools pileup files
- Filters variants by coverage, read depth, variant frequency, and base quality
- Determines somatic status (Somatic, Germline, LOH) for Tumor-Normal pairs
- Compares, merges, and intersects two lists of variants
- Limits variant calls to a set of target positions or target regions
- Free for non-commercial use.
About VarScan
This Computer program is available in English. It was last updated on 29 September, 2026. VarScan is compatible with the following operating systems: Linux, Mac, Windows.
The company that develops VarScan is dkoboldt. The latest version released by its developer is 3.9.
The download we have available for VarScan has a file size of 111.4 KB. Just click the green Download button above to start the downloading process. The program is listed on our website since 2015-06-03 and was downloaded 0 times. We have already checked if the download link is safe, however for your own protection we recommend that you scan the downloaded software with your antivirus. Your antivirus may detect the VarScan as malware if the download link is broken.
How to install VarScan on your Windows device:
- Click on the Download button on our website. This will start the download from the website of the developer.
- Once the VarScan is downloaded click on it to start the setup process (assuming you are on a desktop computer).
- When the installation is finished you should be able to see and run the program.
Version History
version 3.9
posted on 2015-06-03
version files
posted on 2010-11-08
Several fixes and updates
Disclaimer
External Download
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